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Figures for Paper
Chela James
06 September, 2019
Charlotta’s paper
Figures for Paper
DGE summary
DGE performed after removing outliers illustrated in the tSNA/PCA/UMAPs below
Volcano plot
GO
UMAP/tSNE plot or PCA plot
tSNE
PCA
UMAP
Take out CD34+CD38-CD45RA-
tSNE
PCA
UMAP
IL7R only
tSNE
PCA
UMAP not working for small sample size
Charlotta’s paper
Figures for Paper
DGE summary
differences between fetal and adult cells in general
DGE performed after removing outliers illustrated in the tSNA/PCA/UMAPs below
Volcano plot
HSC like cells, IL7R prog and proB from adult BM vs w12-13, w8-10 and CS samples
exclude CS16 for now
GO
combine all changed genes between fetal and adult
UMAP/tSNE plot or PCA plot
only IL7R and proB from BM and all fetal stages
exclude CB, do with and without CS16
tSNE
PCA
UMAP
Take out CD34+CD38-CD45RA-
tSNE
PCA
UMAP
IL7R only
tSNE
PCA
UMAP not working for small sample size
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