Charlotta’s paper

Figures for Paper

DGE summary

  • differences between fetal and adult cells in general

DGE performed after removing outliers illustrated in the tSNA/PCA/UMAPs below

Volcano plot

  • HSC like cells, IL7R prog and proB from adult BM vs w12-13, w8-10 and CS samples
  • exclude CS16 for now

GO

  • combine all changed genes between fetal and adult

UMAP/tSNE plot or PCA plot

  • only IL7R and proB from BM and all fetal stages
  • exclude CB, do with and without CS16

tSNE

PCA

UMAP

Take out CD34+CD38-CD45RA-

tSNE

PCA

UMAP

IL7R only

tSNE

PCA

UMAP not working for small sample size

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